SNP Profiles of IMC 14   View Data

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 Key

 1234567891011121314
_Input profile
CCAGCGTTTTTTCCCCAAGGCTAATTAA
1._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
2._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
3._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
4._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
5._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
6._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
7._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
8._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
9._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
10._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
11._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
12._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
13._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
14._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
15._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
16._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
17._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
18._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
19._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAATTAA
20._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
21._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
22._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAATTAA
23._GC-04-054-3-18
CCAGCGTTTTTTCCCCAAGGCTAATTAA
24._GC-03-030-3-09
CCAGCGTTTTTTCCCCAAGGCTAA_AA
25._IMC_14
CCAGCGTTTTTTCCCCAAGGCTAA_AA
26._RUQ_1634
__CG____CC_GG_AA__
27._IMC_14
CCAGCGTTTTTTCC_AAGGCTAATTAA
28._RUQ_1634
_AGCGTT______CTAA__
29._RUQ_1634
CTAG_CTTTCCCTCTAAAACTAGCTAA
30._GC-03-30-3-9
GGAGCGAAAAAA__AAGGAGAAAAAA
31._RUQ_1634
GGAGCGAAAAAA__AAGGAGAAAAAA
 1516171819202122232425262728
_Input profile
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
1._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
2._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
3._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
4._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
5._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
6._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
7._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
8._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
9._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
10._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
11._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
12._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
13._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
14._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
15._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
16._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
17._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
18._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
19._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
20._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
21._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
22._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
23._GC-04-054-3-18
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
24._GC-03-030-3-09
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
25._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
26._RUQ_1634
___CCGG_AAGG__CC___
27._IMC_14
GGCCCCCCGGCCAAGGGGCTCCAAGGAA
28._RUQ_1634
__CCCCGGCCAAGGGGCTCCAA_AA
29._RUQ_1634
GGTTCCGGGGCTCCCCTTCTCCAGGGAA
30._GC-03-30-3-9
GGGGGGGGCCGGAAGGCC_CC_GGAA
31._RUQ_1634
GGGGGGGGCCGGAAGGCC_CC_GGAA
 293031323334353637     
_Input profile
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
1._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
2._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
3._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
4._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
5._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
6._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
7._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
8._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
9._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
10._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
11._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
12._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
13._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
14._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
15._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
16._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
17._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
18._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
19._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
20._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
21._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
22._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
23._GC-04-054-3-18
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
24._GC-03-030-3-09
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
25._IMC_14
TTAGCGAACTGTACTTGGX_XX_XX_XX_XX_X
26._RUQ_1634
_AG____AC__X_XX_XX_XX_XX_X
27._IMC_14
TTAG_ACCTGTACTTGGX_XX_XX_XX_XX_X
28._RUQ_1634
TTAGCGACCTGTAC__X_XX_XX_XX_XX_X
29._RUQ_1634
CTAACCACCTGTCCTTGGX_XX_XX_XX_XX_X
30._GC-03-30-3-9
AAAGCGACAGACACTTGGX_XX_XX_XX_XX_X
31._RUQ_1634
AAAGCGACAGACACTTGGX_XX_XX_XX_XX_X

Input profile: IMC_14

 
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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

1._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

2._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

6._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

8._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

10._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

11._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

12._IMC_14

identical
37 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

13._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

14._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

15._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

16._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

17._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

18._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

19._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

20._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

21._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

22._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

23._IMC_14 GC-04-054-3-18

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

24._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14 RUQ_1634

identical
11 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._IMC_14

98.6 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

28._IMC_14 RUQ_1634

97.8 %
23 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._IMC_14 RUQ_1634

62.5 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

53 %
33 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

53 %
33 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1270 7TcSNP1165 8TcSNP1144 9TcSNP1075 10TcSNP1062
11TcSNP1060 12TcSNP998 13TcSNP994 14TcSNP953 15TcSNP929
16TcSNP917 17TcSNP891 18TcSNP872 19TcSNP723 20TcSNP619
21TcSNP591 22TcSNP577 23TcSNP560 24TcSNP534 25TcSNP529
26TcSNP469 27TcSNP429 28TcSNP372 29TcSNP242 30TcSNP230
31TcSNP226 32TcSNP193 33TcSNP151 34TcSNP150 35TcSNP144
36TcSNP32 37TcSNP25